HPA home

VECTORSTRIP : Strips out DNA between a pair of vector sequences (EMBOSS)



your e-mail
( = required, = conditionally required)


input Section


required Section

Max allowed % mismatch (-mismatch)
Show only the best hits (minimise mismatches)? (-besthits)

advanced Section


output Section

input Section


sequence -- dna [sequences] (-sequence) : please enter either :
  1. the name of a file:
  2. or the actual data here:

(sequence format)


[Return to the main part with your favorite browser's Back function]

required Section


vectorfilesection Section


[Return to the main part with your favorite browser's Back function]

vectorfilesection Section

Are your vector sequences in a file? (-vectorfile)

Name of vectorfile (-vectors) : please enter either :
  1. the name of a file:
  2. or the actual data here:



[Return to the main part with your favorite browser's Back function]

advanced Section

5' sequence (-linkera)
3' sequence (-linkerb)

[Return to the main part with your favorite browser's Back function]

output Section

outf (-outf)
outseq (-outseq)

Output format for: outseq

[Return to the main part with your favorite browser's Back function]

your e-mail

Some explanations about the options


input Section
enter either the name of a file or the actual data
if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
OR you can type your data in the next area, or cut and paste it from another application.
(but not both)
Sequence format
The sequence will be automatically converted in the format needed for the program
providing you enter a sequence either:
in plain (raw) sequence format or in one of the following known formats:
IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW
You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:
database:accession.

Pise form generator version: 5.a (16 Dec 2002 11:55)