SIGCLEAVE : Reports protein signal cleavage sites (EMBOSS)
Some explanations about the options
input Section- enter either the name of a file or the actual data
- if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
- OR you can type your data in the next area, or cut and paste it from another application.
- (but not both)
advanced Section- Use prokaryotic cleavage data (-prokaryote)
- Specifies the sequence is prokaryotic and changes the default scoring data file name
- Pval (-pval)
- Specifies the number of columns before the residue at the cleavage site in the weight matrix table
- Nval (-nval)
- specifies the number of columns after the residue at the cleavage site in the weight matrix table
required Section- Minimum weight (-minweight)
- Minimum scoring weight value for the predicted cleavage site
- Sequence format
- The sequence will be automatically converted in the format needed for the program
- providing you enter a sequence either:
- in plain (raw) sequence format or in one of the following known formats:
- IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW
- You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:database:accession.- enter either the name of a file or the actual data
Pise form generator version: 5.a (16 Dec 2002 11:55)
