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PRIMERSEARCH : Searches DNA sequences for matches with primer pairs (EMBOSS)



your e-mail
( = required, = conditionally required)


input Section


required Section


output Section

input Section


sequences -- dna [sequences] (-sequences) : please enter either :
  1. the name of a file:
  2. or the actual data here:

(sequence format)


Primer file (-primers) : please enter either :

  1. the name of a file:
  2. or the actual data here:



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required Section

Allowed percent mismatch (-mismatchpercent)

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output Section

out (-out)

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your e-mail

Some explanations about the options


input Section
enter either the name of a file or the actual data
if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
OR you can type your data in the next area, or cut and paste it from another application.
(but not both)
Sequence format
The sequence will be automatically converted in the format needed for the program
providing you enter a sequence either:
in plain (raw) sequence format or in one of the following known formats:
IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW
You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:
database:accession.

Pise form generator version: 5.a (16 Dec 2002 11:55)