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NEWCPGREPORT : Report CpG rich areas (EMBOSS)



your e-mail
( = required, = conditionally required)


sequence -- DNA [sequences] (-sequence) : please enter either :

  1. the name of a file:
  2. or the actual data here:

(sequence format)

Window size (-window)
Shift increment (-shift)
Minimum Length (-minlen)
Minimum observed/expected (-minoe)
Minimum percentage (-minpc)
outfile (-outfile)
Show observed/expected threshold line (-obsexp)
Show CpG rich regions (-cg)
Show percentage line (-pc)

your e-mail

Some explanations about the options


Main parameters
enter either the name of a file or the actual data
if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
OR you can type your data in the next area, or cut and paste it from another application.
(but not both)

Sequence format
The sequence will be automatically converted in the format needed for the program
providing you enter a sequence either:
in plain (raw) sequence format or in one of the following known formats:
IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW
You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:
database:accession.

Pise form generator version: 5.a (16 Dec 2002 11:54)