INFOSEQ : Displays some simple information about sequences (EMBOSS)

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(

= required,

= conditionally required)

input Section

output Section

input Section

sequence [sequences] (-sequence) : please enter either :

the name of a file:
or the actual data here:

(sequence format)

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output Section

Output sequence details to a file (-outfile)
Format output as an HTML table (-html)
Display the specified columns (-only)
Display column headings (-heading)
Display the USA of the sequence (-usa)
Display 'name' column (-name)
Display 'accession' column (-accession)
Display 'type' column (-type)
Display 'length' column (-length)
Display 'percent GC content' column (-pgc)
Display 'description' column (-description)

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Some explanations about the options

input Section
enter either the name of a file or the actual data: if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button); OR you can type your data in the next area, or cut and paste it from another application.; (but not both)
output Section
Output sequence details to a file (-outfile): If you enter the name of a file here then this program will write the sequence details into that file.
Display the specified columns (-only): This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying:
'-nohead -noname -noacc -notype -nopgc -nodesc'
to get only the length output, you can specify
'-only -length'
Sequence format: The sequence will be automatically converted in the format needed for the program; providing you enter a sequence either:; in plain (raw) sequence format or in one of the following known formats:; IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW; You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:
database:accession.

Pise form generator version: 5.a (16 Dec 2002 11:54)