DIFFSEQ : Find differences (SNPs) between nearly identical sequences (EMBOSS)
Some explanations about the options
input Section- enter either the name of a file or the actual data
- if you are using Netscape 2.x or later, you can select a file by typing its name, or better, by selecting it with the Netscape file browser (Browse button)
- OR you can type your data in the next area, or cut and paste it from another application.
- (but not both)
output Section- Feature file for output asequence (-afeatout)
- File for output of first sequence's normal tab delimited gff's
- Feature file for output bsequence (-bfeatout)
- File for output of second sequence's normal tab delimited gff's
- Output in columns format (-columns)
- The default format for the output report file is to have several lines per difference giving the sequence positions, sequences and features.
If this option is set true then the output report file's format is changed to a set of columns and no feature information is given.- Sequence format
- The sequence will be automatically converted in the format needed for the program
- providing you enter a sequence either:
- in plain (raw) sequence format or in one of the following known formats:
- IG,GenBank,NBRF,EMBL,GCG,DNAStrider,Fitch,fasta,Phylip,PIR,MSF,ASN,PAUP,CLUSTALW
- You may enter in the text area a database entry code, or an accession number, in this form:
database:entry_name
or:database:accession.- enter either the name of a file or the actual data
Pise form generator version: 5.a (16 Dec 2002 11:53)
